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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2587942_2588064_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2587942 - 2588064
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCAAGCTGAACT
Flanking Amino Acid:
MLTLVLCSCSGQPASIPGHL
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
69.7
0.44
0.9
67
34.4
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
47.7
-0
2
62.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022503
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038886
2582492 - 2588908
6417