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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2616587_2616770_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2616587 - 2616770
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTGCCATGACT
Flanking Amino Acid:
YFNSFLESFQGFFVSVFYCF
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.6
0.73
0.8
73.6
36.9
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
62.3
0.47
1.8
80.14
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013119
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013712
2614613 - 2646781
32169