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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2618743_2619806_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2618743 - 2619806
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CCGACACTAACC
Flanking Amino Acid:
YQGPMILVLLINFIFLFNIV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
85
0.79
0.7
76.7
32
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
45.5
-0.3
2
52.88
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013119
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013712
2614613 - 2646781
32169