About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2619880_2620749_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2619880 - 2620749
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
ATGTCCCCAACA
Flanking Amino Acid:
AIGKLYYDDEKCWFGKRAGV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
75
35.1
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
40.2
-1.1
3
52.3
38.8
Minor BPS
57
0.22
1.9
71.25
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013119
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013712
2614613 - 2646781
32169