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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2623217_2624703_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2623217 - 2624703
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
CCCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAC
U12 Branch Point Sequence:
GTGCTGTTACCC
Flanking Amino Acid:
YFYGVRYNTTNNGYRECLAN
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
59.1
0.23
1.2
52.7
42.9
Major PPT
82.5
0.73
0.7
79.8
25.7
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
44.6
-0.4
2.2
55.7
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013119
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013712
2614613 - 2646781
32169