Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2624824_2637553_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2624824 - 2637553

Intron Length:

12730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAA

U12 Branch Point Sequence:

TAACCTTCAACC

Flanking Amino Acid:

ESLPPATNHTGPQCNASIDL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.7

84.8

25.1

Major BPS

65.8

0.39

1.1

69.2

36.3

Major PPT

74.4

0.55

0.8

67.4

33.9

Minor 5ss

31.8

-2.1

3.3

42.9

44.7

Minor BPS

59.6

0.28

1.5

66.71

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013712

2614613 - 2646781

32169