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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2637639_2645813_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2637639 - 2645813
Intron Length:
8175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCTCCCCACAC
Flanking Amino Acid:
ALLLLLFLLQAFLLWDSPVA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
71.2
0.48
0.8
65.2
29.5
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
44.5
-0.4
2.2
60.69
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013119
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013712
2614613 - 2646781
32169