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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2687884_2689889_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2687884 - 2689889
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTAACAC
5'SS Class:
major
3'SS Sequence:
TGCCCAGAACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATGCCCAGAACC
Flanking Amino Acid:
PLDSFQEIPLQMLNSSSVSE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1
49.8
34.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
53
0.07
1.1
44.3
40.6
Minor 5ss
32.4
-2
3.1
38
41.5
Minor BPS
51.5
0.03
1.8
64.83
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000876
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000854
2687821 - 2701555
13735