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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2690008_2699997_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2690008 - 2699997
Intron Length:
9990

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAATGGCC
5'SS Class:
major
3'SS Sequence:
ATTATCATGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTATATGATT
Flanking Amino Acid:
FLDIYLAALLGNLLIVVTVM
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
69.7
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
69.2
0.43
1.1
67.4
42.9
Minor 5ss
19.8
-3.5
4
24.9
37
Minor BPS
49.6
0.05
1.8
72.5
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000876
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000854
2687821 - 2701555
13735