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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2709149_2709184_F

Intron Information:

Intron Rank:
1
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
2709149 - 2709184
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTATTCTT
5'SS Class:
major
3'SS Sequence:
AATAGCAGAGCAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTCTTGATT
Flanking Amino Acid:
ISSAPFQMAE
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.3
68.7
41.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
49.6
-0
1.1
41.8
42
Minor 5ss
39
-1.2
3
57
40.2
Minor BPS
77.1
0.93
1
87.14
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000855
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000832
2709147 - 2714854
5708