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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2733456_2733761_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2733456 - 2733761
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
GCTTTCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CACTTCTCAACT
Flanking Amino Acid:
VKPSKSVAAKKPKQEDSDSF
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.5
0.66
0.8
70.1
36.5
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
61.9
0.45
1.6
72.77
44.1

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036