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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2735558_2735692_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2735558 - 2735692
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATAAGTTTAAAA
Flanking Amino Acid:
KPAPKPRAAPKETSEKTAKA
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82
0.72
0.8
74.7
40
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
49.1
-0
1.9
60.73
38.9

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036