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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2737988_2738123_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2737988 - 2738123
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGCTAA
5'SS Class:
weak_major
3'SS Sequence:
CTCAATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATGCTCAATT
Flanking Amino Acid:
DLAAFVEELDAVEAKQMQDE
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
65.8
36.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.6
0.58
0.9
69
36.6
Minor 5ss
55.9
0.2
2.4
68
43.5
Minor BPS
60.8
0.42
2
81.17
40.7

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036