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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2738208_2738299_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2738208 - 2738299
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TGGTTTACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCATTCTCAACT
Flanking Amino Acid:
DELCKQRDNKEKELENLKCK
Intron Amino Acid Position:
1085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
69.7
35.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.5
0.53
0.9
71.4
39.5
Minor 5ss
42.1
-0.9
2.9
53.6
37.6
Minor BPS
68.7
0.66
1.5
80.74
41

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036