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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2738444_2738704_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2738444 - 2738704
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACAT
Flanking Amino Acid:
VKAWKELQNKEEEEEEEDES
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.3
0.7
0.9
79.1
33.5
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
51.3
0.12
1.9
76.7
40.1

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036