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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2741077_2741210_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2741077 - 2741210
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CTGACTTGGACT
Flanking Amino Acid:
TELPVRTWTQTYKEQVLEPM
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
82.1
0.72
0.8
80.3
30.9
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
52.7
0.17
1.6
68.14
43.1

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036