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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2747334_2747499_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2747334 - 2747499
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTGGTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
TTTCCCACAGTT
Flanking Amino Acid:
CKLSEKFIKGAVGCGIVESI
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
80.4
0.68
0.9
74.1
40.3
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
48.4
-0
2
75.26
41.2

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036