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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2747638_2748095_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2747638 - 2748095
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TATTTAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TCTTATTTAACT
Flanking Amino Acid:
KNGVGVKPFQVKNHMWIFVN
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
78.2
0.63
0.9
71.2
38.4
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
76.5
0.91
1.4
88.66
36.3

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036