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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2748989_2749316_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2748989 - 2749316
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AGACCTTCAACT
Flanking Amino Acid:
CREYKKLFKQTWTDNMGKAG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.7
41.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.8
0.72
0.8
80.5
31.5
Minor 5ss
38.7
-1.3
3
49
47
Minor BPS
57.5
0.31
1.5
70.39
39.9

Associated Gene:

Gene:
TOP2A
Ensembl Gene ID:
ENSAPLG00000006390
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006805
2732019 - 2751054
19036