About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2796451_2798097_F

Intron Information:

Intron Rank:
144015
Intron Class:
major
Intron Phase:
Intron Coordinates:
2796451 - 2798097
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATTGCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATCCATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.2
0.77
0.8
81.3
35.7
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
62.3
0.38
1.7
72.57
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027626
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034907
2796055 - 2802816
6762