Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2798295_2799251_F

Intron Information:

Intron Rank:

144016

Intron Class:

major

Intron Phase:

Intron Coordinates:

2798295 - 2799251

Intron Length:

957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTCGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAG

U12 Branch Point Sequence:

TCCTGCTTCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

69.6

42.7

Major BPS

50.2

0.01

1.5

54.7

43.1

Major PPT

74.5

0.55

0.9

69.1

Minor 5ss

31.2

-2.2

3.1

31.3

42.6

Minor BPS

45.2

-0.4

2.4

57.24

47.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027626

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034907

2796055 - 2802816

6762