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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2799300_2800039_F

Intron Information:

Intron Rank:
144017
Intron Class:
major
Intron Phase:
Intron Coordinates:
2799300 - 2800039
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTACACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
47.8
-0
2
68.84
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027626
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034907
2796055 - 2802816
6762