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Intron Name: Anas_platyrhynchos_platyrhynchos_28_2841019_2841873_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2841019 - 2841873

Intron Length:

855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TAATATTTAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

66.6

39.6

Major BPS

90.7

1.01

0.7

19.9

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

27.1

-2.6

26.2

36.9

Minor BPS

65.2

0.47

1.4

70.48

35.4

Associated Gene:

Gene:

SMARCE1

Ensembl Gene ID:

ENSAPLG00000008102

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027229

2824935 - 2842102

17168