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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2847447_2848787_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2847447 - 2848787
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
GGATCATAAACA
Flanking Amino Acid:
KESAEAHGTIQTEKVDEVIK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.7
40
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
35.8
-1.6
3.3
54
43.7
Minor BPS
51.2
0.03
2
63.5
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008286
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008602
2847153 - 2851314
4162