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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2848894_2849076_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2848894 - 2849076
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
TSKITFMLPSDGVKKHETEK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008286
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008602
2847153 - 2851314
4162