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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2858648_2859017_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2858648 - 2859017
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
CCTTCTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATTATTTAAAA
Flanking Amino Acid:
EIELQSQLAMKKSLEDTLAE
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
40.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.5
0.6
0.8
71.8
31.7
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
59.8
0.31
1.6
68.02
37.5

Associated Gene:

Gene:
KRT12
Ensembl Gene ID:
ENSAPLG00000008362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008689
2857600 - 2861948
4349