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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2860329_2860611_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2860329 - 2860611
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTACTT
Flanking Amino Acid:
ARLAADDFRLKYENEVALRQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.7
0.71
0.8
76.1
31.8
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
51.5
0.13
2
76.67
39.8

Associated Gene:

Gene:
KRT12
Ensembl Gene ID:
ENSAPLG00000008362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008689
2857600 - 2861948
4349