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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2860695_2861291_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2860695 - 2861291
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAAAG
5'SS Class:
major
3'SS Sequence:
GCTTGCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
ACTCTCTGGACA
Flanking Amino Acid:
YPIIEDLRNKIINATIDNAR
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.5
43.8
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
73.1
0.52
1
62.5
43.1
Minor 5ss
37
-1.5
3.2
48
47.7
Minor BPS
53.7
0.11
1.5
62.44
37.3

Associated Gene:

Gene:
KRT12
Ensembl Gene ID:
ENSAPLG00000008362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008689
2857600 - 2861948
4349