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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2866406_2866487_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2866406 - 2866487
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
QEAKERFEKQTEELNLEVAI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
KRT20
Ensembl Gene ID:
ENSAPLG00000008808
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009172
2864575 - 2869115
4541