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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2867552_2867760_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2867552 - 2867760
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
GATGACAAAACA
Flanking Amino Acid:
AKLAADDFRLKFENELLLRQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
43.3
-0.5
2.1
55.49
42.7

Associated Gene:

Gene:
KRT20
Ensembl Gene ID:
ENSAPLG00000008808
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009172
2864575 - 2869115
4541