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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2880296_2880953_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2880296 - 2880953
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTGTATAATT
Flanking Amino Acid:
KTKKSESKAKEYAGLTNRKI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
53.8
0.2
2
76.08
41.4

Associated Gene:

Gene:
KRT23
Ensembl Gene ID:
ENSAPLG00000008879
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009247
2879749 - 2890130
10382