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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2880986_2881915_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2880986 - 2881915
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTACTT
Flanking Amino Acid:
YRLLLEGNVDGKTKKSESKA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
65.8
41.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
29.6
-2.3
3.2
30.1
43
Minor BPS
62.8
0.48
1.9
82.44
38.8

Associated Gene:

Gene:
KRT23
Ensembl Gene ID:
ENSAPLG00000008879
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009247
2879749 - 2890130
10382