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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2897804_2897935_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2897804 - 2897935
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATGTGATCT
Flanking Amino Acid:
KDAEAWFLTQTDELNREVAT
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
43.5
-0.4
2.3
66.03
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008949
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009305
2895870 - 2900517
4648