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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2906215_2906736_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2906215 - 2906736
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CACATCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
QMFGSLSGTADKRDKLADGK
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
69.9
0.45
0.9
62.2
38.1
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008997
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009402
2905942 - 2911177
5236