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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2942032_2942483_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2942032 - 2942483
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
QACRSGGESQGYARKSFD*
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.5
0.55
0.9
69.2
35.7
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029963
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044743
2942006 - 2947616
5611