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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2944742_2945363_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2944742 - 2945363
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTTTGAATC
Flanking Amino Acid:
LIYLKKNHEEEMKGLQTQSG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
63
0.39
1.4
70.08
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029963
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044743
2942006 - 2947616
5611