About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2945521_2945974_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2945521 - 2945974
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGTCTGTGATT
Flanking Amino Acid:
TRMTVDDFRLKYETEYTLHQ
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
64.9
0.34
1
62.2
43.6
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
56.5
0.28
2
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029963
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044743
2942006 - 2947616
5611