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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2946058_2946848_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2946058 - 2946848
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAA
U12 Branch Point Sequence:
GCTGCCTGATCA
Flanking Amino Acid:
YRTIEELQNQIVGANVDLNK
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
63.9
0.34
1.2
66
40.9
Major PPT
85.5
0.8
0.7
77.2
31.5
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
49.3
-0
1.9
60.84
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029963
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044743
2942006 - 2947616
5611