Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2955319_2955826_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2955319 - 2955826

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

GCTGTGGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TTCTCCATATCT

Flanking Amino Acid:

SHSGRSCESQGGAENLKLCL

Intron Amino Acid Position:

598

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

87.2

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

68.1

0.41

1.1

57.2

47.5

Minor 5ss

36.1

-1.6

50.2

45.8

Minor BPS

63.9

0.52

1.9

84.93

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010535

2954702 - 2960502

5801