Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2956147_2956736_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2956147 - 2956736

Intron Length:

590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTACGTACA

5'SS Class:

major

3'SS Sequence:

TCCTTTCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

CCTTTCTTACAG

Flanking Amino Acid:

ALLQEGQHGIGSSQGGGGGG

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

1.1

71.8

39.9

Major BPS

65.7

0.39

71.3

30.3

Major PPT

88.3

0.86

0.7

83.2

25.4

Minor 5ss

34.5

-1.8

2.8

34.8

41.1

Minor BPS

49.9

-0.1

1.8

55.39

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010535

2954702 - 2960502

5801