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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2956964_2957156_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2956964 - 2957156
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCAAC
5'SS Class:
major
3'SS Sequence:
CTTCCATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
EIELQSQLSMVRSLQSNLED
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.7
38.7
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
79.4
0.66
0.8
76.9
30.5
Minor 5ss
45.9
-0.4
2.6
56.9
42.2
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010116
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010535
2954702 - 2960502
5801