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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2957283_2957776_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2957283 - 2957776
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAAACCAAAAAA
Flanking Amino Acid:
EEVERWYESKMEEVSQQVHS
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.8
0.76
0.8
80.8
36.5
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
45.1
-0.3
2
57.13
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010116
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010535
2954702 - 2960502
5801