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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2957939_2958356_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2957939 - 2958356
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
MIGLKKNHEEEIKSLQTQSG
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010116
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010535
2954702 - 2960502
5801