Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2966677_2966998_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2966677 - 2966998

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

GTTTCTCTATTT

Flanking Amino Acid:

VPPCKTGDIQVTCRRICD*

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

73.3

36.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

95.2

1.02

0.5

28.1

Minor 5ss

34.6

-1.8

3.5

42.5

44.6

Minor BPS

54.7

0.23

1.9

77.23

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037248

2966651 - 2971287

4637

ENSAPLT00000032505

2966651 - 2981229

14579