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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2968698_2978904_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2968698 - 2978904
Intron Length:
10207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTCC
5'SS Class:
major
3'SS Sequence:
GTTGTATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTGTCTAATCT
Flanking Amino Acid:
LCCLKKNHEEEMNCLRKQST
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
66.7
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.6
0.67
0.9
70.1
44.9
Minor 5ss
43.7
-0.7
3.1
59.5
45.4
Minor BPS
49.2
0.02
2
71.72
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028586
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032505
2966651 - 2981229
14579