About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2979062_2979625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2979062 - 2979625
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCTTTCTCACTC
Flanking Amino Acid:
SRMTADDFRVKYETELALRQ
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.2
0.63
0.8
69.8
35.5
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
48.1
-0.1
1.8
57.18
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028586
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032505
2966651 - 2981229
14579