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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2991228_2991594_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2991228 - 2991594
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CCAGCCCAAATC
Flanking Amino Acid:
HKEIEDLQNQILCAAMETNK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
82.8
0.74
0.8
76.6
32
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
42.6
-0.5
2
46.97
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022579
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040456
2989547 - 2992128
2582