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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2999586_2999673_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2999586 - 2999673
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
GGCCTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
CTGGCTGTAACG
Flanking Amino Acid:
RDAEQWFFSKTEELNREVAI
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
75.7
0.58
0.9
68.8
37.2
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
47.4
-0.3
2.2
54.01
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008725
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009183
2998126 - 3002852
4727