Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2999836_3000094_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2999836 - 3000094

Intron Length:

259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TTCCACTCCAAT

Flanking Amino Acid:

LAYLKKNHEEEMNALRGQVG

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.4

40.3

Major BPS

75.8

0.64

65.8

Major PPT

89.5

0.89

0.6

22.6

Minor 5ss

34.3

-1.8

2.8

40.4

45.5

Minor BPS

-0.4

2.2

64.24

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009183

2998126 - 3002852

4727