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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3000634_3002345_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3000634 - 3002345
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GACCTTTTCACT
Flanking Amino Acid:
YRTIEELRSKILAATVENAN
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.1
0.79
0.7
77.5
31.2
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
48.5
-0
1.7
62.49
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008725
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009183
2998126 - 3002852
4727